Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015939325.1_cds_XP_016483970.1_75030
CDS Infomation

[gene=LOC107804567] [db_xref=GeneID:107804567] [protein=protein CHUP1, chloroplastic-like] [protein_id=XP_016483970.1] [location=join(5503..5647,5756..5856,6603..7361,7444..8283)] [gbkey=CDS]
Sequence

ATGGTGAGAGACAATAGGAACGTTAGGCCCGTGCTCTTGAAAATTGGGGTTGTTTTGGTT
CTATCTCTTGGTGGGGTTATTTATACCATTTTTAGAACCAAAAGAATCAAGCCTTCTAAT
TCATTTCCCCCACCGTGCTCTGCAGGTGGTGAAAATGGTGAGCTCACAAATGATGATCGC
GCCTCCCATGCAACTCCAAGATCACCTTCCTCCCGCAAATCAGTTTCTACTGTGTCAGAC
AAGCACGAGGGCCTCCATATCGCTAAACTCATTATTGAGAATTCTTCGGGTGTTTCATCT
AGCAGTGGTATATTCAGCAACGATAGAGATCGATTATTTCTCCTGCCAGAGTTCAATGAA
CTTGTAAAGGAACACCGTTTATCTACCTCAAAGAGCGACATTGAAACACTGATGCAAGAT
TCACCCAGAGAATATAGAATTGTTGAAATGGTTAACCATGAGCAAGAGATTAAGAGCCTG
AAAAATATTGTTAAAACTCTCGAAGAGAGGGAGAGGACTCTAGAAATCCAATTGCTCGAG
TATTATGGTCTTAAGGAGCAAGAAACTGCTATCATGGAGCTTCAAAATCAACTAAAAATA
AACAATATGGAGGCCAAGCTTTTTGGTCTCAAGATTGAGTCATTGAGCGCAGATAAGATG
AGGTTAGAGGCTCAAGTGGCCGATTATGCAAAAGTTGTTTCTGAGCTCGATGCTGCAAAA
GTCAAGATAAAGCAACTCAAAAAGAAATTGAGATCAGAAGCTGATCACAGTAAGGAACAG
ATTTTAACCCTTCAAGAAAAAGTTATGAAGTTGCACGACGAGGAAAAGAAGGCTGTTGAA
GCTGAATCCGATGTTCAGTTAAAGCTCCGAAAACTGAAGGATTTGGAGAATCAGGCTGAT
GAGTTGAAGAAATCTAATCACAGTTTAAGAAAAGAAAATTCAGAACTGGCTCATAGATTA
GAATCTGTTCAGATCATTGCTGCTTCTGTGTTGGAAGATGAAGAAACAGAAGCACTGAAG
GAAGAAACTCTACGGTTGAGAAAGCAAAATGAAGATTTAGCGAAGGAAGTTGACCGGCTT
CAAGCAGATCGGTGCAATGATGCTGAGGAACTAGTCTATCTCCGATGGATAAACGCTTGC
TTGCGGTACGAGCTGAGGAACTTACAGCCTGTTGCAGGAAAAACAATCGCAAGAGACCTC
AGTAAAACATTGAGCCCCAAGTCGGAGGAGAAAGCTAAGCAACTAATTCTTGAATATGCA
AATAAAGAAAGTCAGGGGGAAAGGGAAATTAATGTTAATGATTTCGATTCTGATTGGTCA
TCCTCTCGAACATCCTTTCTTACAGACTCTGGTGAATTTGATGACACTTCTACTGATAAT
TTATCACCCCGTAAGACTTCAGGCAAAAAGAAGGTGTTTAGTAAGCTTATGAGATTACTG
CGGGGAAAGGATAGACGTCTTAGTCGGAGTTCTTCCATGGACATGGTGCACAATGTTGAA
GATAATGTGGCAAGACATTCTAGTTATTCTCCAGGGTACAGTTCTGGTTCATCCAAACAA
TTTCTGGAGTTACATTCGGCGTCTCAAAGTTCAAGGAGCGACAAAGGAGAAAATAACAAC
TATTCGATAGATAGTACGAGAAATAGTGATGGGGGTTCGTCGTCAGGTTCAGGAAGATTG
GATTATATCTCAAATCGTCTGACTGATTCACCTCAAGAAAATATAACTAAAAATGAGTCA
GAAAAAGTCCAGAAAACCGACTTAGTGAAATATGCAGAAGTGTTAAAAGGGTCTCGTTCT
AAAGCTGGATTTTGCAGGAGATCAGCATCTGTTAGTTCCTTCTAA

Peptide Sequence

PEP ID

XP_016483970.1
PEP Infomation

PREDICTED: protein CHUP1, chloroplastic-like [Nicotiana tabacum]
Sequence

MVRDNRNVRPVLLKIGVVLVLSLGGVIYTIFRTKRIKPSNSFPPPCSAGGENGELTNDDR
ASHATPRSPSSRKSVSTVSDKHEGLHIAKLIIENSSGVSSSSGIFSNDRDRLFLLPEFNE
LVKEHRLSTSKSDIETLMQDSPREYRIVEMVNHEQEIKSLKNIVKTLEERERTLEIQLLE
YYGLKEQETAIMELQNQLKINNMEAKLFGLKIESLSADKMRLEAQVADYAKVVSELDAAK
VKIKQLKKKLRSEADHSKEQILTLQEKVMKLHDEEKKAVEAESDVQLKLRKLKDLENQAD
ELKKSNHSLRKENSELAHRLESVQIIAASVLEDEETEALKEETLRLRKQNEDLAKEVDRL
QADRCNDAEELVYLRWINACLRYELRNLQPVAGKTIARDLSKTLSPKSEEKAKQLILEYA
NKESQGEREINVNDFDSDWSSSRTSFLTDSGEFDDTSTDNLSPRKTSGKKKVFSKLMRLL
RGKDRRLSRSSSMDMVHNVEDNVARHSSYSPGYSSGSSKQFLELHSASQSSRSDKGENNN
YSIDSTRNSDGGSSSGSGRLDYISNRLTDSPQENITKNESEKVQKTDLVKYAEVLKGSRS
KAGFCRRSASVSSF

Transcript Sequence

Gene sequence data has not been registered.